We have had multiple bugs with the the Time Doctor Integrations for Basecamp and Jira. They are not working properly for some people and there are some minor bugs for others. However we are hoping to iron out all of these bugs very soon (within the next 2 weeks). At that point we will seek feedback from all of the people using the integrations for any potential improvements or issues.
The concept with integrations is to take the tasks (in Basecamp or Jira) and display them in Time Doctor. This works a bit differently in the two versions.
In Time Doctor to see the integration you click on the right and left arrows and you can see the list of the integration tasks. In Time Doctor Tasks, integrations are in a folder on the left.
Here is how it looks in Time doctor: